Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007716.1_10060_11028_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

10060 - 11028

Intron Length:

969

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

CTTGCTGCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTAAAT

U12 Branch Point Sequence:

GTGTCTTTGTCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

75.2

35.1

Major BPS

0.5

1.1

76.9

32.8

Major PPT

71.3

0.48

0.9

65.1

36.2

Minor 5ss

29.8

-2.3

3.3

38.8

46.3

Minor BPS

46.2

-0.2

3.5

75.31

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015275

Chromosome:

PEDO01007716.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015946

2834 - 13514

10681