About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007716.1_11729_12410_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11729 - 12410
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CCCTCTGGGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
81.7
0.71
0.7
72.7
32.1
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
42.2
-0.5
2.1
54.19
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015275
Chromosome:
PEDO01007716.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015946
2834 - 13514
10681