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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007716.1_12852_12997_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12852 - 12997
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCGGGGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
AAGCCCTAAACT
Flanking Amino Acid:
VLLSMDSFYKVLTKQQQEQA
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
57.1
0.16
1.1
52.2
41.7
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
60.8
0.42
1.7
73.31
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028072
Chromosome:
PEDO01007716.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025695
10813 - 13177
2365