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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007759.1_2342_2383_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
2342 - 2383
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTCTCCTGC
5'SS Class:
weak_minor
3'SS Sequence:
TTGGAGCCATGAG|C
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
AGTGCTTGGAGC
Flanking Amino Acid:
VTKSCFGLCLPCGRHTL
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
42.4
-0.4
1.3
31.5
38
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
45.3
-0.2
1.7
48.6
44.7
Minor 5ss
61.4
0.38
2.1
68.1
43.1
Minor BPS
44.8
-0.4
1.8
52.9
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006892
Chromosome:
PEDO01007759.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009162
58 - 2404
2347