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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007788.1_1420_1550_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1420 - 1550
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTGCC
5'SS Class:
major
3'SS Sequence:
CCCCTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
CCCCAGTTAACG
Flanking Amino Acid:
KKTMTDADWKSFESWMHKWL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
70.3
35.3
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
73.4
0.53
0.7
67.3
26.2
Minor 5ss
28
-2.5
3.2
36
40.9
Minor BPS
43.5
-0.6
2.2
45.09
46.9

Associated Gene:

Gene:
CD74
Ensembl Gene ID:
ENSAPLG00000015926
Chromosome:
PEDO01007788.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019640
21 - 3360
3340
ENSAPLT00000018618
21 - 2943
2923
ENSAPLT00000016643
21 - 3360
3340
ENSAPLT00000041900
21 - 3360
3340