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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007788.1_2657_2787_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2657 - 2787

Intron Length:

131

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGATAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TCTCTCCCAACA

Flanking Amino Acid:

VDMLKLGAEKAK*

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

79.1

24.3

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

74.9

0.56

0.8

70.1

29.3

Minor 5ss

31.8

-2.1

37.8

Minor BPS

49.4

-0

1.9

65.62

40.5

Associated Gene:

Gene:

CD74

Ensembl Gene ID:

ENSAPLG00000015926

Chromosome:

PEDO01007788.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018618

21 - 2943

2923

ENSAPLT00000016643

21 - 3360

3340