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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007788.1_988_1077_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
988 - 1077
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCCAC
5'SS Class:
major
3'SS Sequence:
TTCCCTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCACCCCCACCT
Flanking Amino Acid:
LPLAPSLDDTPVKDMGPPSN
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
63.6
42.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
79.9
0.67
0.7
72.6
32.1
Minor 5ss
38.6
-1.3
3.1
51.7
45
Minor BPS
44.4
-0.3
2.1
63.61
45.9

Associated Gene:

Gene:
CD74
Ensembl Gene ID:
ENSAPLG00000015926
Chromosome:
PEDO01007788.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016643
21 - 3360
3340
ENSAPLT00000041900
21 - 3360
3340
ENSAPLT00000019640
21 - 3360
3340