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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007795.1_2255_2323_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2255 - 2323
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GGTCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
GTGTCCCTAATG
Flanking Amino Acid:
SLRSYVEDEAELGKAMVTEL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
69.3
0.44
0.9
61.6
35
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
60.7
0.2
1.8
64.95
43

Associated Gene:

Gene:
RAD9A
Ensembl Gene ID:
ENSAPLG00000018732
Chromosome:
PEDO01007795.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047516
1369 - 3145
1777
ENSAPLT00000042778
1063 - 3209
2147