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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007795.1_2816_2911_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2816 - 2911
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ACCACCACCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
CCCCCCCCACCA
Flanking Amino Acid:
MKSFLGVFRSLP
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
59.5
0.21
0.9
51.3
31.7
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
40
-0.7
2
45.3
43.7

Associated Gene:

Gene:
RAD9A
Ensembl Gene ID:
ENSAPLG00000018732
Chromosome:
PEDO01007795.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047516
1369 - 3145
1777
ENSAPLT00000042778
1063 - 3209
2147