Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007795.1_820_918_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

820 - 918

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCTGC

5'SS Class:

major

3'SS Sequence:

CCCTGCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTCAT

U12 Branch Point Sequence:

GCCCCCCTCACT

Flanking Amino Acid:

VDETLMCSFQILKPADKNKG

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

60.1

41.9

Major BPS

74.8

0.62

0.9

75.3

29.7

Major PPT

67.3

0.39

0.8

57.3

33.4

Minor 5ss

37.4

-1.4

3.3

49.7

46.9

Minor BPS

46.8

-0.1

2.1

62.79

46.7

Associated Gene:

Gene:

PPP1CA

Ensembl Gene ID:

ENSAPLG00000013896

Chromosome:

PEDO01007795.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014469

220 - 1029

810