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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007823.1_1058_1146_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1058 - 1146
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
AAAGCCCTGATG
Flanking Amino Acid:
LETDFPLPLYSDQYVTLRGP
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
71.8
0.49
0.9
65.1
36.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
45.8
-0.4
1.8
47.04
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019100
Chromosome:
PEDO01007823.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018527
45 - 1229
1185