About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007823.1_631_750_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
631 - 750
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
AGTTTACGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAC
U12 Branch Point Sequence:
CCCCCCCCAGTT
Flanking Amino Acid:
EGEGGGVPRTHLREVAWWDP
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.1
48.9
42
Major BPS
62.6
0.31
1.1
55.1
41.7
Major PPT
64.7
0.33
1
55.5
44.3
Minor 5ss
25.4
-2.8
3.4
33.9
42.9
Minor BPS
39.7
-0.7
1.9
50.02
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019100
Chromosome:
PEDO01007823.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018527
45 - 1229
1185