Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007826.1_1039_1142_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1039 - 1142

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ACG|GCGGAGCAG

5'SS Class:

weak_major

3'SS Sequence:

CCAGGTTGCAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCCCAG

U12 Branch Point Sequence:

CCCTCCCCAGGT

Flanking Amino Acid:

QQPRALPCLTEQRKWLHQRP

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.9

0.05

1.3

38.6

39.5

Major BPS

44.4

-0.3

1.6

54.3

42.9

Major PPT

44.9

-0.3

1.7

44.3

41.1

Minor 5ss

12.8

-4.3

3.6

19.4

38.1

Minor BPS

-0.7

2.2

52.27

48.2

Associated Gene:

Gene:

TM6SF2

Ensembl Gene ID:

ENSAPLG00000000927

Chromosome:

PEDO01007826.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026469

78 - 2361

2284