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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007826.1_590_724_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
590 - 724
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
GTTGTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
GGGGTCTGATCC
Flanking Amino Acid:
YLAMITAMSQRKSYRSLGLF
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
54.4
44.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
75.8
0.58
0.9
69.7
36.7
Minor 5ss
30.8
-2.2
3.3
38.2
46.7
Minor BPS
44.1
-0.4
1.7
48.18
41.4

Associated Gene:

Gene:
TM6SF2
Ensembl Gene ID:
ENSAPLG00000000927
Chromosome:
PEDO01007826.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001039
54 - 3141
3088