About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007827.1_1837_2064_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1837 - 2064
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
CTCCTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
ACCTCCTCACTC
Flanking Amino Acid:
VPLIGFSGAPWTLMSYMIEG
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
65.6
40.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
34.9
-1.7
3.3
50
46.2
Minor BPS
48.7
-0.1
1.8
56.36
42.8

Associated Gene:

Gene:
UROD
Ensembl Gene ID:
ENSAPLG00000010210
Chromosome:
PEDO01007827.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010665
21 - 3965
3945