Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007827.1_2398_2628_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2398 - 2628

Intron Length:

231

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGTC

5'SS Class:

strong_major

3'SS Sequence:

CTGCTGTCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAT

U12 Branch Point Sequence:

CCTCGCTCATGC

Flanking Amino Acid:

PKLCCELTLQPLRRFPLDAA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.7

34.4

Major BPS

67.4

0.43

1.2

38.9

Major PPT

75.4

0.57

0.9

68.9

37.1

Minor 5ss

35.5

-1.7

3.5

49.2

47.3

Minor BPS

37.2

-0.9

2.2

43.26

44.3

Associated Gene:

Gene:

UROD

Ensembl Gene ID:

ENSAPLG00000010210

Chromosome:

PEDO01007827.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010665

21 - 3965

3945