Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007827.1_2904_3039_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2904 - 3039

Intron Length:

136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGCAAACC

5'SS Class:

weak_major

3'SS Sequence:

TTTCCTCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

TTGGTGCTAACA

Flanking Amino Acid:

MDPAGPKGFPKLKN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.6

0.2

1.1

38.4

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

86.6

0.82

0.7

81.4

23.5

Minor 5ss

27.1

-2.6

26.7

36.4

Minor BPS

45.6

-0.3

2.4

62.99

43.7

Associated Gene:

Gene:

UROD

Ensembl Gene ID:

ENSAPLG00000010210

Chromosome:

PEDO01007827.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010665

21 - 3965

3945