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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007827.1_660_784_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
660 - 784
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
ATCATGTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTCCCATCATG
Flanking Amino Acid:
LDPCALYAPKEKIGELVKKM
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
68.6
0.42
0.9
61.8
39.2
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
49.9
-0.1
2.1
65.85
42

Associated Gene:

Gene:
UROD
Ensembl Gene ID:
ENSAPLG00000010210
Chromosome:
PEDO01007827.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010665
21 - 3965
3945