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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007827.1_852_1103_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
852 - 1103
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCCTTCTTACTG
Flanking Amino Acid:
LDWTIRPQEARAQTGKNITL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
73.7
35.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
83
0.74
0.8
77.8
29.4
Minor 5ss
35.5
-1.6
3.5
51.6
45.1
Minor BPS
55.4
0.03
1.7
57.74
45

Associated Gene:

Gene:
UROD
Ensembl Gene ID:
ENSAPLG00000010210
Chromosome:
PEDO01007827.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010665
21 - 3965
3945