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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007854.1_149_231_F

Intron Information:

Intron Rank:
132831
Intron Class:
major
Intron Phase:
Intron Coordinates:
149 - 231
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGATAT
5'SS Class:
major
3'SS Sequence:
GGGTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
ACCCCCCTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
33
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
69.1
0.43
1
58.2
47.3
Minor 5ss
33.7
-1.9
3.1
39
46.2
Minor BPS
50
-0
1.7
58.44
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021446
Chromosome:
PEDO01007854.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017913
21 - 2059
2039