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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007859.1_3102_3255_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3102 - 3255
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACCCCTCATT
Flanking Amino Acid:
TVFMNNNTPLMLPEKEIDYS
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.1
0.65
0.7
73.6
24.6
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
47.6
-0.1
2
66.94
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009501
Chromosome:
PEDO01007859.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009915
2877 - 8916
6040