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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007859.1_6988_7072_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6988 - 7072
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCACAA
U12 Branch Point Sequence:
CAGCCACAAGCA
Flanking Amino Acid:
RYIEDEEYYKASITRLPIKW
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
45.3
-0.2
1.1
48.9
36.6
Major PPT
71.5
0.48
0.7
65.1
23.5
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
34.6
-1.1
2
40.02
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009501
Chromosome:
PEDO01007859.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009915
2877 - 8916
6040