About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007859.1_8216_8303_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8216 - 8303
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGGTGAG
5'SS Class:
major
3'SS Sequence:
CCTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTGGAG
U12 Branch Point Sequence:
CGGGGTGGAGCT
Flanking Amino Acid:
EVYEGTYTNPKGERVNVAVK
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
59.7
41.3
Major BPS
36
-0.8
1.7
28.5
45.1
Major PPT
82.5
0.73
0.7
76.4
25.6
Minor 5ss
25.7
-2.8
3.2
30.8
43.2
Minor BPS
30.6
-1.3
2.2
40.34
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009501
Chromosome:
PEDO01007859.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009915
2877 - 8916
6040