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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007955.1_6354_6460_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6354 - 6460
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
TQIINITMTKKEPKTEEPLS
Intron Amino Acid Position:
1552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
65.6
33.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
83.8
0.76
0.7
76.7
32
Minor 5ss
25.8
-2.8
3.3
29.9
37
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
NUMA1
Ensembl Gene ID:
ENSAPLG00000017673
Chromosome:
PEDO01007955.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035382
21 - 7550
7530
ENSAPLT00000024228
21 - 7550
7530
ENSAPLT00000018844
21 - 7550
7530