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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007971.1_944_1758_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

944 - 1758

Intron Length:

815

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAGTACC

5'SS Class:

major

3'SS Sequence:

GGCTCTGTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTCCAC

U12 Branch Point Sequence:

ACCGTGCGACCC

Flanking Amino Acid:

KHRPAGFTCLSSSKGSGAAA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

35.7

Major BPS

52.2

0.06

1.4

64.2

Major PPT

71.9

0.49

64.7

41.3

Minor 5ss

33.7

-1.9

2.7

43.9

Minor BPS

29.9

-1.5

2.1

32.79

35.6

Associated Gene:

Gene:

HMX2

Ensembl Gene ID:

ENSAPLG00000030160

Chromosome:

PEDO01007971.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018428

37 - 2358

2322