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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007990.1_127_497_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
127 - 497
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGCG
5'SS Class:
major
3'SS Sequence:
CCTTTTAAACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCCTTTTAAAC
Flanking Amino Acid:
SGRRSGGQPEYLSRRIPQNP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
58
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.7
0.44
1
63.7
40.8
Minor 5ss
22.7
-3.1
3.4
28.9
43.8
Minor BPS
55.7
0.16
1.4
59.98
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018790
Chromosome:
PEDO01007990.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041818
94 - 986
893