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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007990.1_580_894_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
580 - 894
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAAAACA
5'SS Class:
major
3'SS Sequence:
AATTTGCCTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTACCCAATT
Flanking Amino Acid:
RLDTGKWNWGVPEELLVKGL
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
67.7
37.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.3
0.46
0.9
62.9
38.8
Minor 5ss
32.7
-2
2.9
33.2
41.6
Minor BPS
54.9
0.23
2
82.44
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018790
Chromosome:
PEDO01007990.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041818
94 - 986
893