Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008031.1_276_372_F

Intron Information:

Intron Rank:

140258

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

276 - 372

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AT

5'SS Sequence:

AGG|GTAAAAGTA

5'SS Class:

major

3'SS Sequence:

TTCCTTTGTTCAT|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

GAATGTTTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

68.5

36.7

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

45.6

-0.2

3.2

76.1

37.8

Minor 5ss

32.9

-1.9

3.5

38.4

46.7

Minor BPS

0.01

66.67

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025439

Chromosome:

PEDO01008031.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018678

21 - 1213

1193