Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008032.1_2393_3374_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2393 - 3374

Intron Length:

982

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGGA

5'SS Class:

strong_major

3'SS Sequence:

CCGCTTACTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGATAAA

U12 Branch Point Sequence:

GTCCGCTTACTC

Flanking Amino Acid:

AFACFDEEATGFIQEDYLRE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

74.1

36.6

Major BPS

54.7

0.12

1.2

56.1

37.3

Major PPT

67.2

0.39

0.9

58.7

37.1

Minor 5ss

38.1

-1.3

3.1

49.4

46.8

Minor BPS

46.6

-0.2

56.01

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018553

Chromosome:

PEDO01008032.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037169

1892 - 3722

1831