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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008037.1_427_607_R

Intron Information:

Intron Rank:
130183
Intron Class:
major
Intron Phase:
Intron Coordinates:
427 - 607
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TATTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTCCCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
71.7
40.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.7
0.83
0.7
81
30.7
Minor 5ss
43.9
-0.7
2.9
59.1
45.4
Minor BPS
65.5
0.56
1.9
87.52
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017243
Chromosome:
PEDO01008037.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041424
21 - 2104
2084