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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008073.1_1515_1612_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1515 - 1612
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGGGTGCA
5'SS Class:
major
3'SS Sequence:
TCCTCCCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
CTCCTCCCACCC
Flanking Amino Acid:
LQAAVPVARIELLDEVMAGA
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
62.4
38.2
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
70
0.45
0.9
61.9
33.8
Minor 5ss
26.6
-2.7
3.2
32.2
42.4
Minor BPS
40
-0.7
2
47.95
41.8

Associated Gene:

Gene:
LDHD
Ensembl Gene ID:
ENSAPLG00000022939
Chromosome:
PEDO01008073.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030613
111 - 2832
2722
ENSAPLT00000030317
111 - 3002
2892
ENSAPLT00000025815
111 - 2855
2745