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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008073.1_1742_2134_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1742 - 2134
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
CCCCCCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCAAC
U12 Branch Point Sequence:
GTGGCTCCAACC
Flanking Amino Acid:
QGLAEQQQQAEELVRLHGGS
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
49
41.6
Major BPS
49.8
-0
1.2
60
34.3
Major PPT
63.9
0.31
0.8
53.9
29.3
Minor 5ss
29.2
-2.4
3.4
30.7
42.7
Minor BPS
45.5
-0.3
1.9
55.88
42.5

Associated Gene:

Gene:
LDHD
Ensembl Gene ID:
ENSAPLG00000022939
Chromosome:
PEDO01008073.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025815
111 - 2855
2745
ENSAPLT00000030613
111 - 2832
2722
ENSAPLT00000030317
111 - 3002
2892