Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008073.1_2429_2500_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2429 - 2500

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGGGCGCT

5'SS Class:

major

3'SS Sequence:

GTTGTCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CCCCCCTCACCC

Flanking Amino Acid:

QRDLRDAGLTGPMVGHVGDG

Intron Amino Acid Position:

320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.1

57.1

42.2

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

72.3

0.5

0.9

62.7

39.7

Minor 5ss

32.6

-2

3.6

47.6

Minor BPS

46.2

-0.3

1.9

51.61

45.6

Associated Gene:

Gene:

LDHD

Ensembl Gene ID:

ENSAPLG00000022939

Chromosome:

PEDO01008073.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030613

111 - 2832

2722

ENSAPLT00000030317

111 - 3002

2892

ENSAPLT00000025815

111 - 2855

2745