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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008073.1_4756_5102_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4756 - 5102
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
CCTCTCCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
ACGGTCTCACCG
Flanking Amino Acid:
CLSKPRLSYNDDVLTKDAGE
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
78
0.63
0.7
72.3
25.7
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
42.1
-0.7
1.9
40.69
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027620
Chromosome:
PEDO01008073.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044750
2969 - 13241
10273