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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008075.1_899_1077_F

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
899 - 1077
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTCCTGG
5'SS Class:
weak_minor
3'SS Sequence:
AGGAACTGGTCAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TGTGGAA
U12 Branch Point Sequence:
TGAGGAGGAACT
Flanking Amino Acid:
EDVLKQARSPKRWFMLKPSV
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.2
43
41.1
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
48.8
-0
1.2
43.5
46.7
Minor 5ss
54.1
0.14
2.4
63.5
46.2
Minor BPS
36.3
-0.9
2.4
55.65
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030228
Chromosome:
PEDO01008075.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029670
835 - 2379
1545