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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008081.1_4628_4759_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4628 - 4759
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAATTTG
5'SS Class:
major
3'SS Sequence:
CCGTCCCCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCTTCCTCACGG
Flanking Amino Acid:
TPDRFPEGCPNEVQNIKFNS
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
39.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
63
0.29
1
58
33.2
Minor 5ss
43.6
-0.7
2.9
58.5
46.1
Minor BPS
48
-0.2
2.2
59.08
48.4

Associated Gene:

Gene:
SMO
Ensembl Gene ID:
ENSAPLG00000007726
Chromosome:
PEDO01008081.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032705
512 - 4823
4312
ENSAPLT00000008014
1512 - 4795
3284