Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008088.1_2347_2549_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2347 - 2549

Intron Length:

203

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

CCCCGTGCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGACAC

U12 Branch Point Sequence:

CGAGCGATGACA

Flanking Amino Acid:

ILAGAQELPAGADGVLGRVP

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

69.6

42.7

Major BPS

49.5

-0

1.2

58.5

38.2

Major PPT

66.8

0.38

0.9

56.5

38.8

Minor 5ss

30.1

-2.3

3.2

37.6

47.1

Minor BPS

40.8

-0.7

2.3

48.56

41.9

Associated Gene:

Gene:

DDX54

Ensembl Gene ID:

ENSAPLG00000013191

Chromosome:

PEDO01008088.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034700

195 - 3809

3615

ENSAPLT00000013792

195 - 3809

3615