Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008088.1_271_421_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

271 - 421

Intron Length:

151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGTGTG

5'SS Class:

major

3'SS Sequence:

CTGTCCCACCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAACCAT

U12 Branch Point Sequence:

CTCGGTGTAACC

Flanking Amino Acid:

QFAALHENPDIIIATPGRLV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

74.3

36.2

Major BPS

57.8

0.19

1.3

67.1

39.2

Major PPT

67.2

0.39

0.9

58.6

37.4

Minor 5ss

33.3

-1.9

3.4

44.7

43.5

Minor BPS

42.3

-0.6

2.4

52.59

45.8

Associated Gene:

Gene:

DDX54

Ensembl Gene ID:

ENSAPLG00000013191

Chromosome:

PEDO01008088.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034700

195 - 3809

3615

ENSAPLT00000013792

195 - 3809

3615