Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008088.1_3483_3568_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3483 - 3568

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTCGG

5'SS Class:

major

3'SS Sequence:

GTCCTCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

CTGCTCTCAGCA

Flanking Amino Acid:

YRPKDFESERGLSVGGEGSA

Intron Amino Acid Position:

480

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

59.7

46.7

Major BPS

58.6

0.22

1.5

38.9

Major PPT

71.9

0.49

0.8

64.9

30.9

Minor 5ss

27.7

-2.6

2.7

36.8

Minor BPS

-0.2

1.8

56.55

42.8

Associated Gene:

Gene:

DDX54

Ensembl Gene ID:

ENSAPLG00000013191

Chromosome:

PEDO01008088.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013792

195 - 3809

3615