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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008099.1_24503_24905_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24503 - 24905
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
GTGCATGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGAAACTGAACT
Flanking Amino Acid:
FLIVVLQLCGTHAEGRFVDS
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
72.3
31.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
65.8
0.36
1
62
44.1
Minor 5ss
40.9
-1
3
52.6
38.2
Minor BPS
55.9
0.26
1.7
73.32
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008827
Chromosome:
PEDO01008099.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009173
257 - 28350
28094