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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008099.1_600_4749_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
600 - 4749
Intron Length:
4150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTCTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTACAATT
Flanking Amino Acid:
KTYVMSFTMLATWNHKRFII
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.5
0.55
0.9
71.6
38.4
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
49.1
0.01
1.8
73.38
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008827
Chromosome:
PEDO01008099.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009173
257 - 28350
28094