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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_11758_11827_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
11758 - 11827
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CCCGGCTGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
GCTGGCTCACGG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
80.1
30.7
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
59.1
0.21
1
52.3
36.7
Minor 5ss
35
-1.7
3.2
48.2
47.9
Minor BPS
34.7
-1.3
2.2
35.32
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029718
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036668
11503 - 14760
3258