About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_12658_12756_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12658 - 12756
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCCGCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
ACTCACACACCC
Flanking Amino Acid:
SVLTWSKFSKDGAAGFSFWA
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
64.9
0.37
1
67
29.8
Major PPT
67.4
0.39
0.8
60
29.7
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
39.1
-0.8
2
48.81
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029718
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036668
11503 - 14760
3258