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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_13448_13546_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13448 - 13546
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CGTGTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CTGACCTCGACC
Flanking Amino Acid:
LNQRLIRVSSRQANEAWQTE
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
73.7
0.53
0.9
66.1
35.8
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
54.3
0.12
1.7
62.78
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029718
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036668
11503 - 14760
3258