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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_16462_20452_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16462 - 20452
Intron Length:
3991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
TTCTGCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
AGCCGCTCAGTT
Flanking Amino Acid:
PPGSLWGGGGREPPVFTMNF
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
37
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
81.3
0.7
0.8
76.3
32.3
Minor 5ss
27.1
-2.6
3.3
38.2
47
Minor BPS
40.8
-0.6
2
52.9
42.2

Associated Gene:

Gene:
PAN2
Ensembl Gene ID:
ENSAPLG00000005195
Chromosome:
PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044260
16028 - 34465
18438