Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_21623_21704_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21623 - 21704

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGGCCT

5'SS Class:

major

3'SS Sequence:

GTGTCCCTCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

CCCCGCTCACCC

Flanking Amino Acid:

DLNTVQETQKYTVEVPGITI

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

64.8

40.7

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

71.6

0.49

0.9

62.1

39.8

Minor 5ss

-1.8

3.3

47.9

47.8

Minor BPS

39.7

-0.8

2.1

43.27

44.5

Associated Gene:

Gene:

PAN2

Ensembl Gene ID:

ENSAPLG00000005195

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044260

16028 - 34465

18438

ENSAPLT00000005420

20162 - 34465

14304