Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_21783_21933_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21783 - 21933

Intron Length:

151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGCCA

5'SS Class:

major

3'SS Sequence:

CTTACCCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAC

U12 Branch Point Sequence:

CCTCTCTTACCC

Flanking Amino Acid:

FFFCGHTSGKVSLRDLRTFV

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.2

63.2

42.9

Major BPS

69.2

0.48

37.1

Major PPT

74.9

0.56

0.8

65.6

35.9

Minor 5ss

36.6

-1.5

3.3

48.7

Minor BPS

55.5

0.15

1.7

62.68

43.2

Associated Gene:

Gene:

PAN2

Ensembl Gene ID:

ENSAPLG00000005195

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044260

16028 - 34465

18438

ENSAPLT00000005420

20162 - 34465

14304