Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_26420_26911_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26420 - 26911

Intron Length:

492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGGGAG

5'SS Class:

major

3'SS Sequence:

GTTTCGTTGCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TGTCACTCCATG

Flanking Amino Acid:

EADFWKTQAEYAFQRAMMRR

Intron Amino Acid Position:

760

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

40.8

Major BPS

66.3

0.4

1.1

41.8

Major PPT

72.4

0.5

1.1

65.4

45.5

Minor 5ss

21.7

-3.3

3.4

27.2

44.5

Minor BPS

42.9

-0.7

2.1

51.16

42.9

Associated Gene:

Gene:

PAN2

Ensembl Gene ID:

ENSAPLG00000005195

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044260

16028 - 34465

18438

ENSAPLT00000005420

20162 - 34465

14304