Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_28721_28833_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28721 - 28833

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCTCCCCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTGCAC

U12 Branch Point Sequence:

GGTCCCTGCACG

Flanking Amino Acid:

NDFLIEPVDKCEAVQFDMSW

Intron Amino Acid Position:

899

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

46.1

-0.2

1.4

54.6

40.8

Major PPT

70.8

0.47

0.7

63.9

24.5

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

-0.3

55.89

44.5

Associated Gene:

Gene:

PAN2

Ensembl Gene ID:

ENSAPLG00000005195

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044260

16028 - 34465

18438

ENSAPLT00000005420

20162 - 34465

14304