Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01008100.1_29419_29601_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29419 - 29601

Intron Length:

183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGGC

5'SS Class:

major

3'SS Sequence:

CCTGTCTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAG

U12 Branch Point Sequence:

AAGCCCTCAGTC

Flanking Amino Acid:

IDDYISTQEQVVDYLTQYSG

Intron Amino Acid Position:

1030

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

67.5

37.8

Major BPS

48.4

-0.1

1.5

56.9

40.5

Major PPT

79.2

0.66

0.8

72.8

Minor 5ss

28.2

-2.5

3.7

40.6

Minor BPS

46.5

-0.2

1.7

52.17

38.9

Associated Gene:

Gene:

PAN2

Ensembl Gene ID:

ENSAPLG00000005195

Chromosome:

PEDO01008100.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044260

16028 - 34465

18438

ENSAPLT00000005420

20162 - 34465

14304